@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://prostatecancerspec.org/Specimen/CoreNeedleBiopsySpecimen09Part> a fhir:Specimen ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "CoreNeedleBiopsySpecimen09Part"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "https://www.medizininformatik-initiative.de/fhir/ext/modul-patho/StructureDefinition/mii-pr-patho-specimen|2026.0.0" ;
       fhir:index 0 ;
       fhir:link <https://www.medizininformatik-initiative.de/fhir/ext/modul-patho/StructureDefinition/mii-pr-patho-specimen|2026.0.0>
     ], [
       fhir:value "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/SpecimenCore|2026.0.0" ;
       fhir:index 1 ;
       fhir:link <https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/SpecimenCore|2026.0.0>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Specimen CoreNeedleBiopsySpecimen09Part</b></p><a name=\"CoreNeedleBiopsySpecimen09Part\"> </a><a name=\"hcCoreNeedleBiopsySpecimen09Part\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profiles: <a href=\"https://simplifier.net/resolve?scope=de.medizininformatikinitiative.kerndatensatz.patho@2026.0.0&amp;canonical=https://www.medizininformatik-initiative.de/fhir/ext/modul-patho/StructureDefinition/mii-pr-patho-specimen\">MII PR Patho Specimen</a> version: 2026.0.0, <a href=\"https://simplifier.net/resolve?scope=de.medizininformatikinitiative.kerndatensatz.onkologie@2026.0.0&amp;canonical=https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/SpecimenCore\">MII PR Biobank Specimen Bioprobe Core</a> version: 2026.0.0</p></div><blockquote><p><b>MII EX Biobank Feature R5</b></p><ul><li>type: <span title=\"Codes:{http://snomed.info/sct 716935009}\">Left apical peripheral zone of prostate</span></li><li>description: Markiert mit schwarzer Tinte</li></ul></blockquote><p><b>identifier</b>: Placer Identifier/BX24_001_09_A, Filler Identifier/E_24_001_I</p><p><b>accessionIdentifier</b>: <code>https://pathologie.example-hospital.de/fhir/fn/befundbericht</code>/E_24_001</p><p><b>status</b>: Available</p><p><b>type</b>: <span title=\"Codes:{http://snomed.info/sct 309134005}\">Prostate tru-cut biopsy sample</span></p><p><b>subject</b>: <a href=\"Patient-Patient1.html\">Hans Mueller  Male, DoB: 1955-08-15 ( http://example.hospital.de/patient-ids#PAT-2024-001)</a></p><p><b>request</b>: <a href=\"ServiceRequest-CoreNeedleBiopsyReportRequest.html\">ServiceRequest Prostate Pathology biopsy report</a></p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td><td><b>BodySite</b></td></tr><tr><td style=\"display: none\">*</td><td><a href=\"Practitioner-UrologistPractitioner.html\">Practitioner Andreas Weber </a></td><td>2024-01-15 10:46:00+0100</td><td><span title=\"Codes:{http://snomed.info/sct 301759007}\">Tru-cut biopsy of prostate (procedure)</span></td><td><span title=\"Codes:{http://snomed.info/sct 716935009}\">Left apical peripheral zone of prostate</span></td></tr></table><h3>Containers</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Type</b></td><td><b>Additive[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://snomed.info/sct 434746001}\">Specimen vial (physical object)</span></td><td><span title=\"Codes:{http://snomed.info/sct 434162003}\">Neutral buffered formalin (substance)</span></td></tr></table></div>"
  ] ;
  fhir:DomainResource.extension [
     fhir:index 0 ;
     fhir:Element.extension [
       fhir:index 0 ;
       fhir:Extension.url [ fhir:value "type" ] ;
       fhir:Extension.valueCodeableConcept [
         fhir:CodeableConcept.coding [
           fhir:index 0 ;
           a sct:716935009 ;
           fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
           fhir:Coding.code [ fhir:value "716935009" ] ;
           fhir:Coding.display [ fhir:value "Left apical peripheral zone of prostate" ]
         ]
       ]
     ], [
       fhir:index 1 ;
       fhir:Extension.url [ fhir:value "description" ] ;
       fhir:Extension.valueString [ fhir:value "Markiert mit schwarzer Tinte" ]
     ] ;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature" ]
  ] ;
  fhir:Specimen.identifier [
     fhir:index 0 ;
     fhir:Identifier.type [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0203" ] ;
         fhir:Coding.code [ fhir:value "PLAC" ]
       ]
     ] ;
     fhir:Identifier.system [ fhir:value "https://urologie.example-hospital.de/fhir/specimen/placer" ] ;
     fhir:Identifier.value [ fhir:value "BX24_001_09_A" ]
  ], [
     fhir:index 1 ;
     fhir:Identifier.type [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0203" ] ;
         fhir:Coding.code [ fhir:value "FILL" ]
       ]
     ] ;
     fhir:Identifier.system [ fhir:value "https://pathologie.example-hospital.de/fhir/fn/befundbericht" ] ;
     fhir:Identifier.value [ fhir:value "E_24_001_I" ]
  ] ;
  fhir:Specimen.accessionIdentifier [
     fhir:Identifier.system [ fhir:value "https://pathologie.example-hospital.de/fhir/fn/befundbericht" ] ;
     fhir:Identifier.value [ fhir:value "E_24_001" ]
  ] ;
  fhir:Specimen.status [ fhir:value "available"] ;
  fhir:Specimen.type [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       a sct:309134005 ;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
       fhir:Coding.code [ fhir:value "309134005" ] ;
       fhir:Coding.display [ fhir:value "Prostate tru-cut biopsy sample" ]
     ]
  ] ;
  fhir:Specimen.subject [
     fhir:link <http://prostatecancerspec.org/Patient/Patient1> ;
     fhir:Reference.reference [ fhir:value "Patient/Patient1" ]
  ] ;
  fhir:Specimen.request [
     fhir:index 0 ;
     fhir:link <http://prostatecancerspec.org/ServiceRequest/CoreNeedleBiopsyReportRequest> ;
     fhir:Reference.reference [ fhir:value "ServiceRequest/CoreNeedleBiopsyReportRequest" ]
  ] ;
  fhir:Specimen.collection [
     fhir:Specimen.collection.collector [
       fhir:link <http://prostatecancerspec.org/Practitioner/UrologistPractitioner> ;
       fhir:Reference.reference [ fhir:value "Practitioner/UrologistPractitioner" ]
     ] ;
     fhir:Specimen.collection.collectedDateTime [ fhir:value "2024-01-15T10:46:00+01:00"^^xsd:dateTime ] ;
     fhir:Specimen.collection.method [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         a sct:301759007 ;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
         fhir:Coding.code [ fhir:value "301759007" ] ;
         fhir:Coding.display [ fhir:value "Tru-cut biopsy of prostate (procedure)" ]
       ]
     ] ;
     fhir:Specimen.collection.bodySite [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         a sct:716935009 ;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
         fhir:Coding.code [ fhir:value "716935009" ] ;
         fhir:Coding.display [ fhir:value "Left apical peripheral zone of prostate" ]
       ]
     ]
  ] ;
  fhir:Specimen.container [
     fhir:index 0 ;
     fhir:Specimen.container.type [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         a sct:434746001 ;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
         fhir:Coding.code [ fhir:value "434746001" ] ;
         fhir:Coding.display [ fhir:value "Specimen vial (physical object)" ]
       ]
     ] ;
     fhir:Specimen.container.additiveCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         a sct:434162003 ;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
         fhir:Coding.code [ fhir:value "434162003" ] ;
         fhir:Coding.display [ fhir:value "Neutral buffered formalin (substance)" ]
       ]
     ]
  ] .

# - ontology header ------------------------------------------------------------

<http://prostatecancerspec.org/Specimen/CoreNeedleBiopsySpecimen09Part.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl .

# -------------------------------------------------------------------------------------