phenopacket_mapper
Contents:
Introduction
Installation
Quickstart
User Guides
API reference
phenopacket_mapper
Index
Index
A
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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Y
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Z
A
add_code_cell() (phenopacket_mapper.utils.create_ipynb_in_code.NotebookBuilder method)
(phenopacket_mapper.utils.NotebookBuilder method)
add_markdown_cell() (phenopacket_mapper.utils.create_ipynb_in_code.NotebookBuilder method)
(phenopacket_mapper.utils.NotebookBuilder method)
api_base_url (phenopacket_mapper.api_requests.hpo_api_request.HPOAPIRequest attribute)
(phenopacket_mapper.api_requests.HPOAPIRequest attribute)
(phenopacket_mapper.api_requests.orpha_api_request.OrphaAPIRequest attribute)
(phenopacket_mapper.api_requests.OrphaAPIRequest attribute)
APIRequestSuperClass (class in phenopacket_mapper.api_requests)
(class in phenopacket_mapper.api_requests.api_request_super_class)
C
Cardinality (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.cardinality)
cardinality (phenopacket_mapper.data_standards.data_model.DataField attribute)
(phenopacket_mapper.data_standards.data_model.DataSection attribute)
(phenopacket_mapper.data_standards.data_model.OrGroup attribute)
(phenopacket_mapper.data_standards.DataField attribute)
(phenopacket_mapper.data_standards.DataSection attribute)
(phenopacket_mapper.data_standards.OrGroup attribute)
check_data_fields_in_model() (phenopacket_mapper.mapping.mapper.PhenopacketMapper method)
(phenopacket_mapper.mapping.PhenopacketMapper method)
(phenopacket_mapper.PhenopacketMapper method)
code (phenopacket_mapper.data_standards.code.Coding attribute)
(phenopacket_mapper.data_standards.Coding attribute)
CodeableConcept (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.code)
CodeSystem (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.code_system)
Coding (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.code)
coding (phenopacket_mapper.data_standards.code.CodeableConcept attribute)
(phenopacket_mapper.data_standards.CodeableConcept attribute)
compliance (phenopacket_mapper.data_standards.data_model.DataModelInstance attribute)
(phenopacket_mapper.data_standards.DataModelInstance attribute)
D
data (phenopacket_mapper.data_standards.data_model.DataSet attribute)
(phenopacket_mapper.data_standards.DataSet attribute)
data_frame (phenopacket_mapper.data_standards.data_model.DataSet property)
(phenopacket_mapper.data_standards.DataSet property)
data_model (phenopacket_mapper.data_standards.data_model.DataModelInstance attribute)
(phenopacket_mapper.data_standards.data_model.DataSet attribute)
(phenopacket_mapper.data_standards.DataModelInstance attribute)
(phenopacket_mapper.data_standards.DataSet attribute)
DataField (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.data_model)
DataFieldValue (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.data_model)
DataModel (class in phenopacket_mapper)
(class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.data_model)
DataModel2PhenopacketSchema (class in phenopacket_mapper.data_standards.DataModel2PhenopacketSchema)
DataModelInstance (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.data_model)
DataReader (class in phenopacket_mapper.utils.io)
(class in phenopacket_mapper.utils.io.data_reader)
DataSection (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.data_model)
DataSectionInstance (class in phenopacket_mapper.data_standards.data_model)
DataSet (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.data_model)
Date (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.date)
day (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
day_str (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
description (phenopacket_mapper.data_standards.data_model.DataField attribute)
(phenopacket_mapper.data_standards.data_model.OrGroup attribute)
(phenopacket_mapper.data_standards.DataField attribute)
(phenopacket_mapper.data_standards.OrGroup attribute)
(phenopacket_mapper.data_standards.value_set.ValueSet attribute)
(phenopacket_mapper.data_standards.ValueSet attribute)
display (phenopacket_mapper.data_standards.code.Coding attribute)
(phenopacket_mapper.data_standards.Coding attribute)
E
elements (phenopacket_mapper.data_standards.value_set.ValueSet attribute)
(phenopacket_mapper.data_standards.ValueSet attribute)
extend() (phenopacket_mapper.data_standards.value_set.ValueSet method)
(phenopacket_mapper.data_standards.ValueSet method)
F
field (phenopacket_mapper.data_standards.data_model.DataFieldValue attribute)
(phenopacket_mapper.data_standards.DataFieldValue attribute)
fields (phenopacket_mapper.data_standards.data_model.DataModel attribute)
(phenopacket_mapper.data_standards.data_model.DataSection attribute)
(phenopacket_mapper.data_standards.data_model.OrGroup attribute)
(phenopacket_mapper.data_standards.DataModel attribute)
(phenopacket_mapper.data_standards.DataSection attribute)
(phenopacket_mapper.data_standards.OrGroup attribute)
(phenopacket_mapper.DataModel attribute)
formatted_string() (phenopacket_mapper.data_standards.Date method)
(phenopacket_mapper.data_standards.date.Date method)
from_datetime() (phenopacket_mapper.data_standards.Date static method)
(phenopacket_mapper.data_standards.date.Date static method)
from_iso_8601() (phenopacket_mapper.data_standards.Date static method)
(phenopacket_mapper.data_standards.date.Date static method)
G
get() (in module phenopacket_mapper.api_requests)
(in module phenopacket_mapper.api_requests.get)
(phenopacket_mapper.api_requests.api_request_super_class.APIRequestSuperClass method)
(phenopacket_mapper.api_requests.APIRequestSuperClass method)
(phenopacket_mapper.api_requests.hpo_api_request.HPOAPIRequest method)
(phenopacket_mapper.api_requests.HPOAPIRequest method)
(phenopacket_mapper.api_requests.orpha_api_request.OrphaAPIRequest method)
(phenopacket_mapper.api_requests.OrphaAPIRequest method)
get_codesystem_by_namespace_prefx() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.get_codesystem_by_namespace_prefix)
get_field() (phenopacket_mapper.data_standards.data_model.DataModel method)
(phenopacket_mapper.data_standards.DataModel method)
(phenopacket_mapper.DataModel method)
get_field_ids() (phenopacket_mapper.data_standards.data_model.DataModel method)
(phenopacket_mapper.data_standards.DataModel method)
(phenopacket_mapper.DataModel method)
get_field_name() (in module phenopacket_mapper.utils.get_field_name)
H
handle_file_extension() (phenopacket_mapper.utils.io.data_reader.DataReader method)
(phenopacket_mapper.utils.io.DataReader method)
head() (phenopacket_mapper.data_standards.data_model.DataSet method)
(phenopacket_mapper.data_standards.DataSet method)
height (phenopacket_mapper.data_standards.data_model.DataSet property)
(phenopacket_mapper.data_standards.DataSet property)
hour (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
hour_str (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
HPOAPIRequest (class in phenopacket_mapper.api_requests)
(class in phenopacket_mapper.api_requests.hpo_api_request)
I
id (phenopacket_mapper.data_standards.data_model.DataField attribute)
(phenopacket_mapper.data_standards.data_model.DataFieldValue attribute)
(phenopacket_mapper.data_standards.data_model.DataModel attribute)
(phenopacket_mapper.data_standards.data_model.DataModelInstance attribute)
(phenopacket_mapper.data_standards.data_model.DataSection attribute)
(phenopacket_mapper.data_standards.data_model.DataSectionInstance attribute)
(phenopacket_mapper.data_standards.data_model.OrGroup attribute)
(phenopacket_mapper.data_standards.DataField attribute)
(phenopacket_mapper.data_standards.DataFieldValue attribute)
(phenopacket_mapper.data_standards.DataModel attribute)
(phenopacket_mapper.data_standards.DataModelInstance attribute)
(phenopacket_mapper.data_standards.DataSection attribute)
(phenopacket_mapper.data_standards.OrGroup attribute)
(phenopacket_mapper.DataModel attribute)
iri_prefix (phenopacket_mapper.data_standards.code_system.CodeSystem attribute)
(phenopacket_mapper.data_standards.CodeSystem attribute)
is_hierarchical (phenopacket_mapper.data_standards.data_model.DataModel property)
(phenopacket_mapper.data_standards.DataModel property)
(phenopacket_mapper.DataModel property)
iso_8601_datestring() (phenopacket_mapper.data_standards.Date method)
(phenopacket_mapper.data_standards.date.Date method)
L
load_data() (phenopacket_mapper.data_standards.data_model.DataModel method)
(phenopacket_mapper.data_standards.DataModel method)
(phenopacket_mapper.DataModel method)
load_hierarchical_data() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.input)
load_hierarchical_data_recursive() (in module phenopacket_mapper.utils.io.input)
load_hierarchical_dataset() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.input)
load_tabular_data_using_data_model() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.input)
loc_default() (in module phenopacket_mapper.utils)
(in module phenopacket_mapper.utils.pandas_utils)
M
map() (phenopacket_mapper.mapping.mapper.PhenopacketMapper method)
(phenopacket_mapper.mapping.phenopacket_building_block.PhenopacketBuildingBlock method)
(phenopacket_mapper.mapping.PhenopacketBuildingBlock method)
(phenopacket_mapper.mapping.PhenopacketMapper method)
(phenopacket_mapper.PhenopacketMapper method)
map_single() (in module phenopacket_mapper.mapping)
(in module phenopacket_mapper.mapping.phenopacket_building_block)
max (phenopacket_mapper.data_standards.Cardinality attribute)
(phenopacket_mapper.data_standards.cardinality.Cardinality attribute)
min (phenopacket_mapper.data_standards.Cardinality attribute)
(phenopacket_mapper.data_standards.cardinality.Cardinality attribute)
minute (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
minute_str (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
module
phenopacket_mapper
phenopacket_mapper.api_requests
phenopacket_mapper.api_requests.api_request_super_class
phenopacket_mapper.api_requests.get
phenopacket_mapper.api_requests.hpo_api_request
phenopacket_mapper.api_requests.orpha_api_request
phenopacket_mapper.cli
phenopacket_mapper.data_standards
phenopacket_mapper.data_standards.cardinality
phenopacket_mapper.data_standards.code
phenopacket_mapper.data_standards.code_system
phenopacket_mapper.data_standards.data_model
phenopacket_mapper.data_standards.data_models
phenopacket_mapper.data_standards.DataModel2PhenopacketSchema
phenopacket_mapper.data_standards.date
phenopacket_mapper.data_standards.value_set
phenopacket_mapper.mapping
phenopacket_mapper.mapping.map_field
phenopacket_mapper.mapping.mapper
phenopacket_mapper.mapping.phenopacket_building_block
phenopacket_mapper.pipeline
phenopacket_mapper.preprocessing
phenopacket_mapper.preprocessing.preprocess
phenopacket_mapper.preprocessing.preprocess_dict
phenopacket_mapper.preprocessing.preprocess_method
phenopacket_mapper.utils
phenopacket_mapper.utils.create_ipynb_in_code
phenopacket_mapper.utils.get_field_name
phenopacket_mapper.utils.io
phenopacket_mapper.utils.io.data_reader
phenopacket_mapper.utils.io.input
phenopacket_mapper.utils.io.output
phenopacket_mapper.utils.io.read_json
phenopacket_mapper.utils.io.read_xml
phenopacket_mapper.utils.pandas_utils
phenopacket_mapper.utils.parsing
phenopacket_mapper.utils.parsing.get_codesystem_by_namespace_prefix
phenopacket_mapper.utils.parsing.parse_coding
phenopacket_mapper.utils.parsing.parse_data_type
phenopacket_mapper.utils.parsing.parse_date
phenopacket_mapper.utils.parsing.parse_ordinal
phenopacket_mapper.utils.parsing.parse_primitive_data_value
phenopacket_mapper.utils.parsing.parse_value
phenopacket_mapper.utils.parsing.parse_value_set
phenopacket_mapper.utils.recursive_dict_call
phenopacket_mapper.utils.str_to_valid_id
phenopacket_mapper.validate
phenopacket_mapper.validate.validate
month (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
month_str (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
N
name (phenopacket_mapper.data_standards.code_system.CodeSystem attribute)
(phenopacket_mapper.data_standards.CodeSystem attribute)
(phenopacket_mapper.data_standards.data_model.DataField attribute)
(phenopacket_mapper.data_standards.data_model.DataModel attribute)
(phenopacket_mapper.data_standards.data_model.DataSection attribute)
(phenopacket_mapper.data_standards.data_model.OrGroup attribute)
(phenopacket_mapper.data_standards.DataField attribute)
(phenopacket_mapper.data_standards.DataModel attribute)
(phenopacket_mapper.data_standards.DataSection attribute)
(phenopacket_mapper.data_standards.OrGroup attribute)
(phenopacket_mapper.data_standards.value_set.ValueSet attribute)
(phenopacket_mapper.data_standards.ValueSet attribute)
(phenopacket_mapper.DataModel attribute)
namespace_prefix (phenopacket_mapper.data_standards.code_system.CodeSystem attribute)
(phenopacket_mapper.data_standards.CodeSystem attribute)
NotebookBuilder (class in phenopacket_mapper.utils)
(class in phenopacket_mapper.utils.create_ipynb_in_code)
O
ONE (phenopacket_mapper.data_standards.Cardinality property)
(phenopacket_mapper.data_standards.cardinality.Cardinality property)
ONE_TO_N (phenopacket_mapper.data_standards.Cardinality property)
(phenopacket_mapper.data_standards.cardinality.Cardinality property)
OrGroup (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.data_model)
OrphaAPIRequest (class in phenopacket_mapper.api_requests)
(class in phenopacket_mapper.api_requests.orpha_api_request)
P
parse_bool() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_primitive_data_value)
parse_coding() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_coding)
(phenopacket_mapper.data_standards.code.Coding static method)
(phenopacket_mapper.data_standards.Coding static method)
parse_data_type() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_data_type)
parse_date() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_date)
(phenopacket_mapper.data_standards.Date static method)
(phenopacket_mapper.data_standards.date.Date static method)
parse_float() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_primitive_data_value)
parse_int() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_primitive_data_value)
parse_ordinal() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_ordinal)
parse_primitive_data_value() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_primitive_data_value)
parse_single_data_type() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_data_type)
parse_value() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_value)
parse_value_set() (in module phenopacket_mapper.utils.parsing)
(in module phenopacket_mapper.utils.parsing.parse_value_set)
(phenopacket_mapper.data_standards.value_set.ValueSet static method)
(phenopacket_mapper.data_standards.ValueSet static method)
parse_xml() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.read_xml)
phenopacket_mapper
module
phenopacket_mapper.api_requests
module
phenopacket_mapper.api_requests.api_request_super_class
module
phenopacket_mapper.api_requests.get
module
phenopacket_mapper.api_requests.hpo_api_request
module
phenopacket_mapper.api_requests.orpha_api_request
module
phenopacket_mapper.cli
module
phenopacket_mapper.data_standards
module
phenopacket_mapper.data_standards.cardinality
module
phenopacket_mapper.data_standards.code
module
phenopacket_mapper.data_standards.code_system
module
phenopacket_mapper.data_standards.data_model
module
phenopacket_mapper.data_standards.data_models
module
phenopacket_mapper.data_standards.DataModel2PhenopacketSchema
module
phenopacket_mapper.data_standards.date
module
phenopacket_mapper.data_standards.value_set
module
phenopacket_mapper.mapping
module
phenopacket_mapper.mapping.map_field
module
phenopacket_mapper.mapping.mapper
module
phenopacket_mapper.mapping.phenopacket_building_block
module
phenopacket_mapper.pipeline
module
phenopacket_mapper.preprocessing
module
phenopacket_mapper.preprocessing.preprocess
module
phenopacket_mapper.preprocessing.preprocess_dict
module
phenopacket_mapper.preprocessing.preprocess_method
module
phenopacket_mapper.utils
module
phenopacket_mapper.utils.create_ipynb_in_code
module
phenopacket_mapper.utils.get_field_name
module
phenopacket_mapper.utils.io
module
phenopacket_mapper.utils.io.data_reader
module
phenopacket_mapper.utils.io.input
module
phenopacket_mapper.utils.io.output
module
phenopacket_mapper.utils.io.read_json
module
phenopacket_mapper.utils.io.read_xml
module
phenopacket_mapper.utils.pandas_utils
module
phenopacket_mapper.utils.parsing
module
phenopacket_mapper.utils.parsing.get_codesystem_by_namespace_prefix
module
phenopacket_mapper.utils.parsing.parse_coding
module
phenopacket_mapper.utils.parsing.parse_data_type
module
phenopacket_mapper.utils.parsing.parse_date
module
phenopacket_mapper.utils.parsing.parse_ordinal
module
phenopacket_mapper.utils.parsing.parse_primitive_data_value
module
phenopacket_mapper.utils.parsing.parse_value
module
phenopacket_mapper.utils.parsing.parse_value_set
module
phenopacket_mapper.utils.recursive_dict_call
module
phenopacket_mapper.utils.str_to_valid_id
module
phenopacket_mapper.validate
module
phenopacket_mapper.validate.validate
module
PhenopacketBuildingBlock (class in phenopacket_mapper.mapping)
(class in phenopacket_mapper.mapping.phenopacket_building_block)
PhenopacketMapper (class in phenopacket_mapper)
(class in phenopacket_mapper.mapping)
(class in phenopacket_mapper.mapping.mapper)
preprocess() (in module phenopacket_mapper.preprocessing)
(in module phenopacket_mapper.preprocessing.preprocess)
(phenopacket_mapper.data_standards.data_model.DataSet method)
(phenopacket_mapper.data_standards.DataSet method)
preprocess_dict() (in module phenopacket_mapper.preprocessing)
(in module phenopacket_mapper.preprocessing.preprocess_dict)
preprocess_method() (in module phenopacket_mapper.preprocessing)
(in module phenopacket_mapper.preprocessing.preprocess_method)
protobuf_timestamp() (phenopacket_mapper.data_standards.Date method)
(phenopacket_mapper.data_standards.date.Date method)
R
read_data_model() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.input)
read_json() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.read_json)
read_phenopacket_from_json() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.input)
read_phenopackets() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.input)
read_validate() (in module phenopacket_mapper.validate)
(in module phenopacket_mapper.validate.validate)
read_xml() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.read_xml)
recursive_collect_all_members_data_model() (in module phenopacket_mapper.data_standards.data_model)
recursive_dict_call() (in module phenopacket_mapper.utils)
(in module phenopacket_mapper.utils.recursive_dict_call)
remove_at_symbols() (in module phenopacket_mapper.utils.io.read_xml)
remove_duplicates() (phenopacket_mapper.data_standards.value_set.ValueSet method)
(phenopacket_mapper.data_standards.ValueSet method)
required (phenopacket_mapper.data_standards.data_model.DataField attribute)
(phenopacket_mapper.data_standards.data_model.DataSection attribute)
(phenopacket_mapper.data_standards.data_model.OrGroup attribute)
(phenopacket_mapper.data_standards.DataField attribute)
(phenopacket_mapper.data_standards.DataSection attribute)
(phenopacket_mapper.data_standards.OrGroup attribute)
resources (phenopacket_mapper.data_standards.data_model.DataModel attribute)
(phenopacket_mapper.data_standards.DataModel attribute)
(phenopacket_mapper.data_standards.value_set.ValueSet property)
(phenopacket_mapper.data_standards.ValueSet property)
(phenopacket_mapper.DataModel attribute)
S
second (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
second_str (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
section (phenopacket_mapper.data_standards.data_model.DataSectionInstance attribute)
set_version() (phenopacket_mapper.data_standards.code_system.CodeSystem method)
(phenopacket_mapper.data_standards.CodeSystem method)
specification (phenopacket_mapper.data_standards.data_model.DataField attribute)
(phenopacket_mapper.data_standards.DataField attribute)
str_to_valid_id() (in module phenopacket_mapper.utils)
(in module phenopacket_mapper.utils.str_to_valid_id)
synonyms (phenopacket_mapper.data_standards.code_system.CodeSystem attribute)
(phenopacket_mapper.data_standards.CodeSystem attribute)
system (phenopacket_mapper.data_standards.code.Coding attribute)
(phenopacket_mapper.data_standards.Coding attribute)
T
text (phenopacket_mapper.data_standards.code.CodeableConcept attribute)
(phenopacket_mapper.data_standards.code.Coding attribute)
(phenopacket_mapper.data_standards.CodeableConcept attribute)
(phenopacket_mapper.data_standards.Coding attribute)
U
url (phenopacket_mapper.data_standards.code_system.CodeSystem attribute)
(phenopacket_mapper.data_standards.CodeSystem attribute)
V
validate() (in module phenopacket_mapper.validate)
(in module phenopacket_mapper.validate.validate)
(phenopacket_mapper.data_standards.data_model.DataFieldValue method)
(phenopacket_mapper.data_standards.data_model.DataModelInstance method)
(phenopacket_mapper.data_standards.data_model.DataSectionInstance method)
(phenopacket_mapper.data_standards.DataFieldValue method)
(phenopacket_mapper.data_standards.DataModelInstance method)
(phenopacket_mapper.validate.validate.Validator method)
Validator (class in phenopacket_mapper.validate.validate)
value (phenopacket_mapper.data_standards.data_model.DataFieldValue attribute)
(phenopacket_mapper.data_standards.DataFieldValue attribute)
values (phenopacket_mapper.data_standards.data_model.DataModelInstance attribute)
(phenopacket_mapper.data_standards.data_model.DataSectionInstance attribute)
(phenopacket_mapper.data_standards.DataModelInstance attribute)
ValueSet (class in phenopacket_mapper.data_standards)
(class in phenopacket_mapper.data_standards.value_set)
version (phenopacket_mapper.data_standards.code_system.CodeSystem attribute)
(phenopacket_mapper.data_standards.CodeSystem attribute)
W
width (phenopacket_mapper.data_standards.data_model.DataSet property)
(phenopacket_mapper.data_standards.DataSet property)
write() (in module phenopacket_mapper.utils.io)
(in module phenopacket_mapper.utils.io.output)
write_to_file() (phenopacket_mapper.utils.create_ipynb_in_code.NotebookBuilder method)
(phenopacket_mapper.utils.NotebookBuilder method)
Y
year (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
year_str (phenopacket_mapper.data_standards.Date attribute)
(phenopacket_mapper.data_standards.date.Date attribute)
Z
ZERO_TO_N (phenopacket_mapper.data_standards.Cardinality property)
(phenopacket_mapper.data_standards.cardinality.Cardinality property)
ZERO_TO_ONE (phenopacket_mapper.data_standards.Cardinality property)
(phenopacket_mapper.data_standards.cardinality.Cardinality property)