phenopacket_mapper.cli.mapping_command module

phenopacket_mapper.cli.mapping_command.main(args)

Mapping command: Executes the pipeline mapping a dataset in the format to the Phenopacket schema

This method launches the mapping command, which executes the pipeline mapping a dataset in the format to the Phenopacket schema.

The mapping command is intended to remove the necessity of writing code to run the mapping while slightly reducing the flexibility of the mapping process. For more options we recommend performing the mapping programmatically.

Run pm mapping -h for help.