phenopacket_mapper.data_standards.data_model module

class phenopacket_mapper.data_standards.data_model.DataField(name: str, section: str, description: str, data_type: List[type | CodeSystem | str], required: bool = True, specification: str = None, ordinal: str = None)[source]

Bases: object

This class defines fields used in the definition of a DataModel

name: str

section: str

description: str

data_type: List[type | CodeSystem | str]

required: bool

specification: str

ordinal: str

Bases: object

This class defines the value of a DataField in a DataModelInstance

field: DataField

value: int | float | str | bool | Date | CodeSystem

class phenopacket_mapper.data_standards.data_model.DataModel(data_model_name: str, fields: List[DataField], resources: List[CodeSystem])[source]

Bases: object

This class defines a data model for medical data using DataField

data_model_name: str

fields: List[DataField]

resources: List[CodeSystem]

class phenopacket_mapper.data_standards.data_model.DataModelInstance(data_model: DataModel, values: List[DataFieldValue])[source]

Bases: object

This class defines an instance of a DataModel, i.e. a record in a dataset

data_model: DataModel

values: List[DataFieldValue]